FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index5_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20844275 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4390045 | 2.6181536 | 5.482514 | 1 |
| CCTGG | 4360020 | 2.5866206 | 6.247696 | 1 |
| CTTCT | 4607980 | 2.5276563 | 5.715866 | 1 |
| CTGGA | 4220440 | 2.4696474 | 8.868862 | 1 |
| TCCAG | 4149615 | 2.3796637 | 5.8623557 | 2 |
| CTGCT | 4095985 | 2.336599 | 5.076602 | 1 |
| CTCCT | 4134795 | 2.3115876 | 7.8046484 | 1 |
| CTGGG | 3808500 | 2.3055134 | 8.660412 | 1 |
| CAGGA | 3819995 | 2.2470975 | 5.459828 | 1 |
| CCCAG | 3761600 | 2.1985142 | 7.461144 | 1 |
| CTTCA | 3983700 | 2.1967266 | 5.8569884 | 1 |
| CTCCA | 3898235 | 2.1908178 | 8.195093 | 1 |
| CAGAA | 3719735 | 2.115118 | 5.0697646 | 1 |
| CTCTG | 3608780 | 2.058668 | 6.533966 | 1 |
| CTGCA | 3493375 | 2.003332 | 5.038962 | 1 |
| CTGGC | 3169970 | 1.8806127 | 5.5226855 | 1 |
| TGGAA | 3254775 | 1.8785865 | 5.104794 | 2 |
| CTGAA | 3298580 | 1.8658112 | 5.553185 | 1 |
| CTCAG | 3057105 | 1.7531462 | 6.2040386 | 1 |
| CTTTG | 3048725 | 1.7064563 | 5.055004 | 1 |
| CTGGT | 2863355 | 1.6667502 | 5.191671 | 1 |
| CTTGG | 2809550 | 1.6354303 | 5.398246 | 1 |
| CTCCC | 2746460 | 1.564871 | 5.173705 | 1 |